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cdna synthesis  (New England Biolabs)


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    Structured Review

    New England Biolabs cdna synthesis
    Cdna Synthesis, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 98/100, based on 1438 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/protoscript+ii+reverse+transcriptase/ProtoScript+II+Reverse+Transcriptase/pmc13178204-68-20-24
    Average 98 stars, based on 1438 article reviews
    cdna synthesis - by Bioz Stars, 2026-09
    98/100 stars

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    Related Articles

    Reverse Transcription:

    Article Title: Polyphosphate modulates the stress-responsive formation of functional RNA-protein condensates in bacteria and mammalian cells.
    Article Snippet: The RNA of the RNA-DNA was fragmented in buffer (4 μL of 5× Protoscript II buffer, M0368S, NEB; 1 μL of 10 mM dNTPs) with a primer complementary to the adaptor oligo (5’CCGCTTATCGAACTGCTG, 20 pmol per reaction) at 94 °C for 6 min prior to reverse transcription. .. The RNA-DNA was reverse transcribed using ProtoScript II Reverse Transcriptase (200 units of M0368S, NEB) which was mixed into each reaction after the addition of DTT (10 mM final) and murine RNase Inhibitor (8 units) to each sample. ..

    Article Title: Linking oxidative stress defense to biofilm architecture: Ohr mediates strain-dependent persistence in Acinetobacter baumannii
    Article Snippet: Ribosomal RNA (rRNA) was depleted from total RNA using the Ribo-Zero rRNA Removal Kit (Bacteria) (Illumina, San Diego, CA, USA). .. First-strand cDNA was synthesized with ProtoScript II Reverse Transcriptase (New England BioLabs, Ipswich, MA, USA), followed by second-strand synthesis using the NEBNext Second Strand Synthesis Reaction Buffer and dNTP mix (New England BioLabs). .. The resulting cDNA fragments were ligated to Illumina adapters and sequenced on the Illumina Novaseq 6000 platform (150 bp paired-end reads) by Genedenovo Biotechnology Co., Ltd (Guangzhou, China).

    Article Title: Host GPCR-cAMP signaling balances Gαs and Gαi activity to control intracellular Brucella infection.
    Article Snippet: Total RNA was extracted using the Direct-zol RNA Miniprep Kit (Zymo Research) with on-column DNase treatment. .. One microgram of RNA was reverse-transcribed using ProtoScript II Reverse Transcriptase (NEB). .. Quantitative PCR was performed using DyNAmo HS SYBR 2X Master Mix (Thermo Scientific) on a Bio-Rad CFX384 Real-Time PCR Detection System.

    Article Title: Poldip2 deficiency attenuates lung disease severity in a mouse model of COVID-19
    Article Snippet: Total RNA was purified with the RNeasy Plus kit (74134, Qiagen) or Direct-zol DNA/RNA Miniprep (R2080, Zymo Research). .. Reverse transcription was performed using Protoscript II reverse transcriptase (M0368, New England Biolabs) with random primers. cDNA was amplified with 2X Forget-Me-Not EvaGreen qPCR Master Mix with Low ROX (31045, Biotium) and primers against mouse TNFα, IL-1β, IL-6, MCP1, CXCL1, IFN-γ, Poldip2 and human ACE2 ( ). .. Reactions were carried out in 96-well qPCR plates (4346907, Thermo Fisher Scientific), using a QuantStudio 7 Flex (Thermo Fisher Scientific) Real-Time qPCR System.

    Article Title: Regulation of YAP activity by nuclear G-actin binding
    Article Snippet: .. RNA and primer were denatured in a 10 μL reaction with 1 μg total RNA, 2 μL Oligo d(T)23 VN (New England Biolabs, S1327S), 1 μL 10 mM dNTP (New England Biolabs, N0447S) for 5 min at 65°C, then cDNA synthesis was synthesized at 42°C for 1 h after adding 2.8 μL Nuclease-free H 2 O (New England Biolabs, B1500L), 4 μL 5X ProtoScript II Buffer, 2 μL 0.1M DTT (Roth, 6908.1), 0.2 μL RNase Inhibitor (40 U/μl) (New England Biolabs, M0307S) and 1 μL ProtoScript® II Reverse Transcriptase (New England Biolabs, M0368L). .. Quantitative PCR (qPCR) for gene expression and CHIP-qPCR analysis was performed in a 20-μl reaction mixture containing 2 μl cDNA or recovered DNA from CHIP, 200 nM primers, and 10 μl GoTaq® qPCR Master Mix (2X) (Promega, A6002).

    Article Title: The conserved nematode pheromone ascr#18 primes plant immunity.
    Article Snippet: DNA contamination was removed by treatment with DNase I (Invitrogen, USA). .. First-strand cDNA was synthetized from 50 ng of mRNA using ProtoScript II Reverse Transcriptase (NEB, USA). .. The qRT-PCR assay was carried out in CFX96 Real-Time System (Bio-Rad, USA), and transcripts were amplified using iTaqTM Universal SYBR Green Supermix (Bio-Rad) from 1 μL of 20X diluted cDNA in a total of 20 μL reaction using 1 μL of each 10 μM gene-specific primers (see Supplementary Table S3).

    Article Title: Unmasking the common enemy: drug resistance mechanisms across three different EGFR inhibitor generations are associated with co-targetable alterations in extracellular matrix signaling.
    Article Snippet: Droplet digital PCR (ddPCR) oils and ddPCR supermix for probes (no dUTP) were obtained from Bio-Rad Laboratories (Hercules, CA, USA). .. Q5® Hot Start High-Fidelity DNA Polymerase (supplied with 5X Q5® Reaction Buffer and 5X Q5® High GC Enhancer), ProtoScript® II Reverse Transcriptase and Deoxynucleotide (dNTP) Solution Mix (for ddPCR assay) were obtained from New England Biolabs (Ipswich, MA, USA). .. NucleoSpin Gel and PCR Clean‐up Kit was purchased from Macherey-Nagel (Düren, Germany).

    Article Title: Proximity proteomics reveals a role for IFI16 during human coronavirus infection
    Article Snippet: Total RNA was harvested and quantified using a NanoDrop (Thermo Scientific). .. A total of 300 ng of RNA was used to generate cDNA using protoscript II reverse transcriptase (M0368, New England biolabs Inc) and diluted 1:20 in DNAse free water before being used as template for qPCR assays. .. The Taqman assay for IFI16 (Applied Biosystems, ID: Hs00986757_m1) was employed in the detection of IFI16 expression following the manufacturers protocol.

    Synthesized:

    Article Title: Linking oxidative stress defense to biofilm architecture: Ohr mediates strain-dependent persistence in Acinetobacter baumannii
    Article Snippet: Ribosomal RNA (rRNA) was depleted from total RNA using the Ribo-Zero rRNA Removal Kit (Bacteria) (Illumina, San Diego, CA, USA). .. First-strand cDNA was synthesized with ProtoScript II Reverse Transcriptase (New England BioLabs, Ipswich, MA, USA), followed by second-strand synthesis using the NEBNext Second Strand Synthesis Reaction Buffer and dNTP mix (New England BioLabs). .. The resulting cDNA fragments were ligated to Illumina adapters and sequenced on the Illumina Novaseq 6000 platform (150 bp paired-end reads) by Genedenovo Biotechnology Co., Ltd (Guangzhou, China).

    Article Title: Regulation of YAP activity by nuclear G-actin binding
    Article Snippet: .. RNA and primer were denatured in a 10 μL reaction with 1 μg total RNA, 2 μL Oligo d(T)23 VN (New England Biolabs, S1327S), 1 μL 10 mM dNTP (New England Biolabs, N0447S) for 5 min at 65°C, then cDNA synthesis was synthesized at 42°C for 1 h after adding 2.8 μL Nuclease-free H 2 O (New England Biolabs, B1500L), 4 μL 5X ProtoScript II Buffer, 2 μL 0.1M DTT (Roth, 6908.1), 0.2 μL RNase Inhibitor (40 U/μl) (New England Biolabs, M0307S) and 1 μL ProtoScript® II Reverse Transcriptase (New England Biolabs, M0368L). .. Quantitative PCR (qPCR) for gene expression and CHIP-qPCR analysis was performed in a 20-μl reaction mixture containing 2 μl cDNA or recovered DNA from CHIP, 200 nM primers, and 10 μl GoTaq® qPCR Master Mix (2X) (Promega, A6002).

    Amplification:

    Article Title: Poldip2 deficiency attenuates lung disease severity in a mouse model of COVID-19
    Article Snippet: Total RNA was purified with the RNeasy Plus kit (74134, Qiagen) or Direct-zol DNA/RNA Miniprep (R2080, Zymo Research). .. Reverse transcription was performed using Protoscript II reverse transcriptase (M0368, New England Biolabs) with random primers. cDNA was amplified with 2X Forget-Me-Not EvaGreen qPCR Master Mix with Low ROX (31045, Biotium) and primers against mouse TNFα, IL-1β, IL-6, MCP1, CXCL1, IFN-γ, Poldip2 and human ACE2 ( ). .. Reactions were carried out in 96-well qPCR plates (4346907, Thermo Fisher Scientific), using a QuantStudio 7 Flex (Thermo Fisher Scientific) Real-Time qPCR System.

    Real-time Polymerase Chain Reaction:

    Article Title: Poldip2 deficiency attenuates lung disease severity in a mouse model of COVID-19
    Article Snippet: Total RNA was purified with the RNeasy Plus kit (74134, Qiagen) or Direct-zol DNA/RNA Miniprep (R2080, Zymo Research). .. Reverse transcription was performed using Protoscript II reverse transcriptase (M0368, New England Biolabs) with random primers. cDNA was amplified with 2X Forget-Me-Not EvaGreen qPCR Master Mix with Low ROX (31045, Biotium) and primers against mouse TNFα, IL-1β, IL-6, MCP1, CXCL1, IFN-γ, Poldip2 and human ACE2 ( ). .. Reactions were carried out in 96-well qPCR plates (4346907, Thermo Fisher Scientific), using a QuantStudio 7 Flex (Thermo Fisher Scientific) Real-Time qPCR System.

    Article Title: Proximity proteomics reveals a role for IFI16 during human coronavirus infection
    Article Snippet: Total RNA was harvested and quantified using a NanoDrop (Thermo Scientific). .. A total of 300 ng of RNA was used to generate cDNA using protoscript II reverse transcriptase (M0368, New England biolabs Inc) and diluted 1:20 in DNAse free water before being used as template for qPCR assays. .. The Taqman assay for IFI16 (Applied Biosystems, ID: Hs00986757_m1) was employed in the detection of IFI16 expression following the manufacturers protocol.

    cDNA Synthesis:

    Article Title: Regulation of YAP activity by nuclear G-actin binding
    Article Snippet: .. RNA and primer were denatured in a 10 μL reaction with 1 μg total RNA, 2 μL Oligo d(T)23 VN (New England Biolabs, S1327S), 1 μL 10 mM dNTP (New England Biolabs, N0447S) for 5 min at 65°C, then cDNA synthesis was synthesized at 42°C for 1 h after adding 2.8 μL Nuclease-free H 2 O (New England Biolabs, B1500L), 4 μL 5X ProtoScript II Buffer, 2 μL 0.1M DTT (Roth, 6908.1), 0.2 μL RNase Inhibitor (40 U/μl) (New England Biolabs, M0307S) and 1 μL ProtoScript® II Reverse Transcriptase (New England Biolabs, M0368L). .. Quantitative PCR (qPCR) for gene expression and CHIP-qPCR analysis was performed in a 20-μl reaction mixture containing 2 μl cDNA or recovered DNA from CHIP, 200 nM primers, and 10 μl GoTaq® qPCR Master Mix (2X) (Promega, A6002).



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